Determining spatial feed distribution in sea cage aquaculture using an aerial camera platform

Within this paper we describe an unmanned aerial vehicle (UAV) based method to estimate the spatial feed pellet distribution in salmon fish-cages and exploit it within a case study to determine the radial pellet distribution for different rotor spreaders and blower configurations. Compared to previously used methods, capturing pellets thrown from a rotary feed spreader in rows of Styrofoam boxes, the UAV based method is simpler and faster to setup and allows to cover a larger portion of the sea cage surface area. We compare results obtained with the Styrofoam box method with results we obtained by an automatic analysis of aerial videos taken by the UAV during feeding experiments. The employed method helps to gain insight into the spatial feed pellet distribution in full-scale salmon fish-cages where the feeding pipe and actual fixation of the spreader may influence the dynamic behaviour of the feeding system. This can also be seen as a step towards a continuous measuring of the feed pellet distribution, particularly in view of possible future feeding systems that may allow to adapt the feed pellet distribution to the actual fish distribution.     

A genetic tool for evaluating male‐mediated stock introgression in Atlantic salmon

1. The Atlantic salmon shows strong population structure with reduced gene flow, owing to homing behaviour. Supportive breeding with allochtonous parr or fish‐farm escapees could affect native population genetic structure by the introgression of foreign genes. Mature male parr are potentially powerful vehicles for promoting introgression: they can fertilize eggs in competition with anadromous males. As a consequence, foreign males contribute more to introgression than foreign females. This effect must be taken into account for the correct development of conservation programmes. Foreign males constitute an inadvertent way to disrupt the genetic structure, as the allochtonous parr or fish‐farm escapees can survive in the river during the parr stage.
2. A short polymorphic fragment of the sex‐determining gene (sdY) was used as a marker to assess introgression via males into south European salmon populations. In order to find haplotype variants for the intronic sequence of sdY, samples were investigated from 16 different rivers across the distribution range of the salmon, together with historical samples (1950–1960) from three Spanish rivers.
3. Two novel haplotypes, in addition to the three already described in Atlantic salmon, were found for this locus. Most samples, including historical ones, displayed the common haplotype (D) previously found in salmon all over Europe; however, north European haplotype variants were also detected in salmon inhabiting the southern European rivers that were systematically supplemented with foreign stocks between 1981 and 1994.
4. Analysis of haplotype variation in the sdY intron constitutes a powerful and inexpensive tool, not only to specifically assess male‐mediated introgression into natural populations of Atlantic salmon, but also for monitoring salmon escapees.

     

The importance of environment and life stage on interpretation of silky shark relative abundance indices for the equatorial Pacific Ocean

Recent large fluctuations in an index of relative abundance for the silky shark in the eastern Pacific Ocean have called into question its reliability as a population indicator for management. To investigate whether these fluctuations were driven by environmental forcing rather than true changes in abundance, a Pacific‐wide approach was taken. Data collected by observers aboard purse‐seine vessels fishing in the equatorial Pacific were used to compute standardized trends in relative abundance by region, and where possible, by shark size category as a proxy for life stage. These indices were compared to the Pacific Decadal Oscillation (PDO), an index of Pacific Ocean climate variability. Correlation between silky indices and the PDO was found to differ by region and size category. The highest correlations by shark size category were for small (<90 cm total length [TL]) and medium (90–150 cm TL) sharks from the western region of the equatorial eastern Pacific (EP) and from the equatorial western Pacific. This correlation disappeared in the inshore EP. Throughout, correlations with the PDO were generally lower for large silky sharks (>150 cm TL). These results are suggestive of changes in the small and medium silky indices being driven by movement of juvenile silky sharks across the Pacific as the eastern edge of the Indo‐Pacific Warm Pool shifts location with ENSO events. Lower correlation of the PDO with large shark indices may indicate that those indices were less influenced by environmental forcing and therefore potentially less biased with respect to monitoring population trends.     

Study of sardine (Sardina pilchardus) regime shifts in the Iberian Atlantic shelf waters

Sardine fisheries in the Iberian Atlantic shelf (36°N–44.5°N) show decadal‐scale cycles. In the late 1990s, a positive phase in sardine stock was expected; on the contrary, catches have declined until now. Regime shifts in climatic and oceanographic variables on different scales (as forcing factor) and shifts in sardine stock (as result) have been used with the aim of identifying the physical variables that explain most of the sardine population variance in the region. Circa 1998, when last sardine regime shift was detected, the main patterns of large‐scale atmospheric circulation in the Northern Hemisphere with influence in the study area namely Northern Atlantic Oscillation (NAO) and East Atlantic (EA) pattern changed and coupled in a combination that led to a rise in sea surface temperature and a decline in the coastal upwelling intensity. Several years with a downwelling situation in average in the main spawning and feeding Iberian sardine areas would have affected the stock abundance, averting the return to the projected positive regime. The sardine negative regime shift was detected first in the regions of the study located further north. The regional variable latent heat flux that groups a set of environmental processes related to the ocean–atmosphere heat exchanges and so with the turbulence manages to explain the 72% of sardine recruitment.     

Putting the pieces together: Recent growth,nutritional condition,and mortality of Engraulis anchoita larvae in the Southwest Atlantic

Dynamics of clupeiform fish populations such as anchovy are frequently impacted by environmental variations which can affect the success of the species recruitment. Herein, we have analyzed recent otolith growth rate, RNA/DNA nutritional condition index (sRD), and mortality rate of argentine anchovy larvae Engraulis anchoita from three different nursery areas in the Southwest Atlantic. We have evaluated the relationship between the environmental variables (abundance of copepod nauplii, temperature, chlorophyll‐a concentration, and abundance of E. anchoita larvae) and larval endogenous variables (size, weight, age, and otolith radius) to sRD and recent growth rate. Fast larval growth rates were observed toward the northern sector of the studied area, characterized by higher temperature. High values of sRD were associated with higher nauplii abundance in the proximity of coastal fronts. The larvae with the lowest growths and lowest minimum values of nutritional condition coincided with the area where there was less abundance of nauplii and higher larval mortality. Larval size and nauplii abundance were positive explanatory factors for both recent growth rate and sRD index. Temperature had a positive effect on recent growth rate and a negative effect on sRD index. This condition index was poorly explained in terms of model fit in comparison with the growth model. The results herein provided could be significant to better understand the recruitment of the species, as to determining favorable areas for the growth and survival of anchovy larvae.     

Do plant‐based diets for Atlantic cod (Gadus morhua L.) need additions of crystalline lysine or methionine?

Atlantic cod (Gadus morhua), initial weight 15 g, were fed ten experimental diets for 15 weeks. The diets were based on a mixture of plant proteins (PP) and fish meal (FM), where PP constituted 65% of dietary protein. PP mixtures were chosen to reach as low levels of lysine and methionine as possible. The diets were supplemented with increasing amounts of lysine (19.2–31.9 g kg^?1 diet) or methionine (9.4–12.3 g kg^?1 diet), in a regression design. No growth difference among diet groups was found in the plant‐based diets. Increased dietary lysine resulted in decreased liver size, plasma triacylglycerol concentration (TAG) and lipid productive value (LPV). Methionine additions did not result in changed Hepatosomatic index (HSI), LPV or plasma TAG. Feed conversion ratio (FCR) and protein utilization were neither affected by lysine nor methionine. Plasma and muscle concentrations of free lysine and methionine correlated with dietary levels 5‐h post feeding. Overall conclusion was that cod maintain growth rates in plant‐based diets if dietary protein was high, without additional supplements of crystalline lysine or methionine. Lysine intake significantly influenced lipid metabolism, showing the necessity to add lysine in plant protein‐based diets to hinder increased lipid deposition. No such effects were found because of lack of methionine additions.     

Ecological consequences of variation in standard metabolism and dominance among salmon parr

Abstract – Standard metabolic rate (SMR, closely related to basal and resting metabolism) varies by up to threefold among juvenile Atlantic salmon, Salmo salar L., of similar size at common temperature. Here, consequences of this variation are predicted by combining empirically derived relationships between SMR, specific dynamic action, energy budgets, water velocity, food level in the environment and food availability to fish. The range of velocities across which growth is predicted to occur is inversely related to a fish’s SMR. Growth is positively related to SMR at high but negatively related to it at low‐food levels. The relationship between food level and the range of velocities over which lower SMR fish can grow but higher SMR fish cannot is asymmetrically bi‐phasic and peaked. It is predicted that maternal manipulation of offspring SMR would generate fitness benefits through bet‐hedging against unpredictability in food level and increases in the overall range of velocities that the family of offspring can occupy and thrive in.     

Some behavioural and ecological factors affecting distribution,biomass and production of juvenile Atlantic salmon

Observations were made in an experimental stream tank (total area 14.7 m²) on juvenile Atlantic salmon, Salmo salar L (parr), relating experimental observations to field observations, including the reported diurnal fasting behaviour of juvenile salmon at water temperatures <10 °C. Densities in the tank ranged from five to twenty parr, at water temperatures ranging from 4.6 °C to 15.8 °C. The wide channel of the stream tank, with mean water velocity of 18.8 cm·s^?1, was the preferred section, where territorial behaviour was observed. Biomass was regulated in the wide channel by territorial mosaics or by dominance hierarchies. Dominance hierarchies were reflected in coloration of the fish. Dominant salmon were generally in the wide channel. Densities of salmon parr (of mean fork length 10.2 cm) in the channel ranged from 0.84 m^?2 to 1.73 m^?2, with an average biomass of 14.2 g·m^?2. Growth was least at the 5.9 °C temperature treatment. In experiments at temperatures below 10 °C, feeding, dominance hierarchy and territorial behaviour were observed in daylight hours, contrary to the published literature. Interactions with other species may affect behaviour. Some observations were made on a closely related species, brown trout (Salmo trutta L.), a commonly cohabiting species in many systems. Trout displaced salmon from their preferred locations in the tank and were more aggressive than the salmon, reducing agonistic behaviour by the salmon. The commonest agonistic act shown by salmon was ‘charge’ and that by the trout was ‘approach’. Some field observations affecting behaviour and production are discussed.     

Main stem movement of Atlantic salmon parr in response to high river temperature

Atlantic salmon become thermally stressed when water temperatures exceed 23 °C. To alleviate this stress, they behaviourally thermoregulate by moving to patches of cold water, often forming large aggregations. These patches are known as thermal refuges. Given the consensus that climate change will increase temperatures in Atlantic salmon catchments, thermal refuges will become increasingly important in minimising summer mortalities. While the behaviour of salmonids within thermal refuges is fairly well understood, less is known about their main stem movement in search of thermal refuges or its thermal and temporal cues. We detail the results of a PIT telemetry study to investigate the main stem movement behaviour of thermally stressed Atlantic salmon parr in a temperature‐impacted river. PIT antennas placed around two thermal refuges and at the upstream and downstream limits of their surrounding reach were used to record the movement of salmonids during a heatwave. We observed parr movement at the upstream and downstream antennas 135 min prior to the occurrence of the midpoint of aggregations in the thermal refuges, indicating that Atlantic salmon parr make reach‐scale movements in search of cool water prior to aggregating. Logistic regression showed that the number of degree hours >28 °C predicted the occurrence of main stem movement with a good degree of accuracy, indicating that this temperature represents a fundamental threshold causing Atlantic salmon parr to move towards cool water. Such data could be instrumental in allowing river managers to place limits on human activity within rivers, allowing salmon populations time to recover following heat stress events.     

Herbivory, pathogens, and epiphylls in Araucaria Forest and ecologically-managed tree monocultures

Over the last centuries, natural forests have been replaced by extensive and homogeneous tree monocultures that cause strong impacts on ecological interactions and ecosystem processes. We expect, however, that ecologically-sustainable management practices can help to mitigate these effects. This study investigates how the replacement of Araucaria Forest by ecologically-managed tree monocultures affects leaf damage patterns produced by external chewers, internal chewers, leaf miners, galling insects, and pathogens, as well as the incidence of epiphylls. The study was performed in the São Francisco de Paula National Forest (southern Brazil) on 12 1-ha plots of Araucaria Forest and ecologically managed plantations of Araucaria, Pinus and Eucalyptus. Overall, 9955 leaves of the understory community (up to 1 m tall) were sampled and analyzed. The mean and the frequency distribution pattern of leaf damage were very similar between Araucaria Forest and all three tree monocultures. Also, there was no difference between habitats in the percentage of leaves attacked by different feeding guilds of insect herbivores and by pathogens. Araucaria Forest had a higher percentage of leaves with epiphylls than Eucalyptus plantation, probably due to its shadier and moister microclimate. Ecologically managed tree monocultures sustain a wide variety of herbivorous insects, pathogens and epiphylls which helps the maintenance of key ecological interactions and the functioning of the ecosystem.